PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC75_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 314aa    MW: 34603.5 Da    PI: 6.4084
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC75_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.13.3e-17136183350
               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
               +lkr rr+++NRe+ArrsR+RK+++++ Le  v++L++eN++L k+l 
  RrC75_p4 136 ALKRMRRMYSNRESARRSRRRKQEQLADLESQVDSLKGENSTLYKQLI 183
               79*****************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.3E-12134198IPR004827Basic-leucine zipper domain
PfamPF001703.1E-15136182IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.921136182IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.56E-12137184No hitNo description
Gene3DG3DSA:1.20.5.1704.8E-12138182No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDGHTAKDTG MKRSASELAL QEYLTKILSS SALSRQESSL DTNPLDPSFD PMNQNHTVEV  60
RDSHLLSERL IQSGFLLDAQ SSVCENLSAD SPLSANKPEV RRRARRTASV STHDRSDEED  120
AETEAGQSEM TNDPNALKRM RRMYSNRESA RRSRRRKQEQ LADLESQVDS LKGENSTLYK  180
QLIDATQLFR SAGTNNRILK SDVETLRIKV SSITLNDLIK WNVLILSSLQ VKLAEDLVAR  240
GSFTSSLNQL LQTHLSPSPQ SINSLHYTGS TSPAITVHSD QSMLPGITLS GQNSSTGLGN  300
VSSEAVSCVS DIWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157RRSRRRKQ
2152157SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483928.10.0PREDICTED: basic leucine zipper 9 isoform X1
SwissprotQ9FUD31e-153BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A0D3DD031e-176A0A0D3DD03_BRAOL; Uncharacterized protein
STRINGBo7g096540.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-139basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]