PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC760_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 266aa    MW: 29208.7 Da    PI: 8.2878
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC760_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.7e-20189223135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  RrC760_p3 189 CQHCGADKTPQWRAGPSGPKTLCNACGVRYKSGRL 223
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.66E-15181245No hitNo description
SMARTSM004019.8E-18183233IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.453183219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-15187221IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.71E-16188237No hitNo description
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
PfamPF003207.5E-18189223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEAFMDELLN FSVPEDEGAL ARSPKNIARR KTGLRPTESF GLLNPDDDLG EVEEEDLEWI  60
SNKDAFPVIE TFVGVLPSEH FIVSSPEREV TEGKQLSPVS VLETSSQNIS TVTTTTTTTS  120
NNSSGSNTNR SAPTMISCCV KFNAPVKTRS KRRRRDDLRI LWSGNEEQGG GQYKRKMTSV  180
AAAGMGRKCQ HCGADKTPQW RAGPSGPKTL CNACGVRYKS GRLVPEYRPA NSPTFSPEFH  240
SNSHRKIVEM RKHVMPGDGG GRNDCG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485619.11e-162PREDICTED: GATA transcription factor 1
SwissprotQ8LAU91e-111GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A3P6ADJ51e-156A0A3P6ADJ5_BRACM; Uncharacterized protein
STRINGBra001925.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-100GATA transcription factor 1