PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7614_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 366aa MW: 41976.1 Da PI: 4.1842

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7614_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	96.9	2e-30	65	159	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++ w+++De+++L ++d++++t+ s +d+dafy +vk+ i++++s++ql++Kir+L k+f +++++ ++++ psf++++d++if+ls++iW+ RrC7614_p1 65 NKMAWTKDDELIILGSIVDYEKETKLSHRSDWDAFYGYVKDFIEADFSRKQLTDKIRKLNKRFLGNKARCNDEEGPSFTSTEDDEIFKLSMIIWD 159 5789******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.3E-23	67	159	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVLGKRTREY SNDSNSGCLE KLLTGKPISP SPLRRMQEDD VSGMEAMLRR RKQPRTTPVS 60 SSSNNKMAWT KDDELIILGS IVDYEKETKL SHRSDWDAFY GYVKDFIEAD FSRKQLTDKI 120 RKLNKRFLGN KARCNDEEGP SFTSTEDDEI FKLSMIIWDT TEETECASNE NVDQAKDVPC 180 VDHERVGEIM DQAKVDVPCV EHEQVNENMD QAKDVPCVEH ERVDENIEQA KDALYVEHER 240 VDVDENMEQA KIDAPSVEHE RVVDENMERE KVLELKKDAP CVEHEQVNNA DTDQEMDVPC 300 VEHEGVNENM NQEEAIPRTE DEPVSNASIE TDKGEKEKSE EEFCALKDTL TDKENNEEDG 360 VDEFCA

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVLGKRTREY SNDSNSGCLE KLLTGKPISP SPLRRMQEDD VSGMEAMLRR RKQPRTTPVS  60
SSSNNKMAWT KDDELIILGS IVDYEKETKL SHRSDWDAFY GYVKDFIEAD FSRKQLTDKI  120
RKLNKRFLGN KARCNDEEGP SFTSTEDDEI FKLSMIIWDT TEETECASNE NVDQAKDVPC  180
VDHERVGEIM DQAKVDVPCV EHEQVNENMD QAKDVPCVEH ERVDENIEQA KDALYVEHER  240
VDVDENMEQA KIDAPSVEHE RVVDENMERE KVLELKKDAP CVEHEQVNNA DTDQEMDVPC  300
VEHEGVNENM NQEEAIPRTE DEPVSNASIE TDKGEKEKSE EEFCALKDTL TDKENNEEDG  360
VDEFCA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484335.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X4
TrEMBL	A0A397ZWE8	1e-178	A0A397ZWE8_BRACM; Uncharacterized protein
STRING	Bra017244.1-P	1e-144	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	1e-61	DNA-binding storekeeper protein-related transcriptional regulator