PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7634_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 195aa    MW: 21361.7 Da    PI: 8.9271
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7634_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.8e-393594261
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                ++++l+cprCds ntkfCyynny+l qPr+fCk+CrryWtkGG+lrn+PvGgg+rkn ++
  RrC7634_p1 35 EQEQLNCPRCDSPNTKFCYYNNYNLLQPRHFCKSCRRYWTKGGSLRNIPVGGGSRKNSSK 94
                57899***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027018.2E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6963993IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-194183IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQEDLTSAAA YYHQSLIMAT AKQQQQQQQQ PGLPEQEQLN CPRCDSPNTK FCYYNNYNLL  60
QPRHFCKSCR RYWTKGGSLR NIPVGGGSRK NSSKRSSVGS SSSSSSAPSS SSPKSKTVSV  120
SDQERSVMGS SEMDPTRMLY GLPVGDPTGG SFSSLLASNM QQIRGVNYQT GSGWYPGMEL  180
GLGFRISDDD TVEKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893443e-57AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449146.11e-111PREDICTED: dof zinc finger protein DOF1.7-like
SwissprotO821552e-81DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A397Y7335e-90A0A397Y733_BRACM; Uncharacterized protein
STRINGAT1G51700.11e-79(Arabidopsis thaliana)
STRINGBo3g181400.11e-79(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-62DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]