PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7696_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 707aa    MW: 80281.7 Da    PI: 6.763
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7696_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.41.1e-1133337021371
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+avss+d ++a+ lL ++++++s++gd ++Rla+yf+  L+arla++++++y al++++ts    s+ l+a+++++ v+P+ k + + aN
  RrC7696_p1 333 LRNLLVSCAQAVSSNDRKMAEDLLRQVRQHSSSHGDGTERLAHYFADSLEARLAGTGTQIYTALSSKKTS---ASDMLKAYQTYVSVCPFNKTAIIFAN 428
                 689***************************************************************9999...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 + Il  +  ++++HiiDf+is+G+QWp+L++ La R++g+ +lRiTg++ p+ g   +e + etg+rLa+++++ +vpfe+n  +a+++e++++e+L++
  RrC7696_p1 429 HSILHLATDAKTIHIIDFGISYGFQWPPLIHRLAWRRGGSCKLRITGIELPQRGfrPAEGVVETGHRLARYCQRYNVPFEYNG-IAQKWETIKVEDLKL 526
                 ****************************************************99*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gE +aVn+ ++  +llde+v+++s+rd+vLkl+k+++P+v++ +    ++n++ F++rf e l +ys+lfd+ +++lp+e+  r++ E+e+ grei+
  RrC7696_p1 527 REGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIKKIRPNVFIPAVLSGSYNAPFFVTRFREVLFHYSSLFDMCDTSLPQEDPMRVMFEKEFYGREIM 625
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                 nvvaceg+er+er e++++W++r ++aGF++++l+++ +++ kl+++  + s+++ v+++ ++l++gWk+r +++ +
  RrC7696_p1 626 NVVACEGSERVERPESYKQWQARAMRAGFRQLTLEKELVQKLKLMVESGYkSKEFDVDQDGNWLLQGWKGRIVYASC 702
                 **********************************************9988899*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.955307684IPR005202Transcription factor GRAS
PfamPF035144.0E-111333702IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MGSYSGGFPG SFDNFDFNFG NGFYLDDQPL LEVPSPFPPP PPAHPDPYSQ ENVPAAAESD  60
FSDSVLKYIS QVLMEEDMEE KPCMFHDALS LQAAEKSLYE ALGEKYPDPL MTTTTTTPVQ  120
LAHSPNSSSP STTSSDWSFD CFENNRPSWF HTPVPDNFVF KSTRSNIPKS SGGSNLVHKS  180
SFNHGLLSTN MFKDSELAFQ FKRGKEEASK FLPKSSQLVI DVESYIPSND PKEHNNSVPY  240
RRKKHWREVE EHLVSEERSK KQTAVYVDEA ELSEMFDKIL LFGRPKEQPL CILNDNFIKE  300
TAKDSSLRSK DDTAQQKHAA SCGNSYVKDT PDLRNLLVSC AQAVSSNDRK MAEDLLRQVR  360
QHSSSHGDGT ERLAHYFADS LEARLAGTGT QIYTALSSKK TSASDMLKAY QTYVSVCPFN  420
KTAIIFANHS ILHLATDAKT IHIIDFGISY GFQWPPLIHR LAWRRGGSCK LRITGIELPQ  480
RGFRPAEGVV ETGHRLARYC QRYNVPFEYN GIAQKWETIK VEDLKLREGE FVAVNSLFRF  540
RNLLDETVAV HSPRDAVLKL IKKIRPNVFI PAVLSGSYNA PFFVTRFREV LFHYSSLFDM  600
CDTSLPQEDP MRVMFEKEFY GREIMNVVAC EGSERVERPE SYKQWQARAM RAGFRQLTLE  660
KELVQKLKLM VESGYKSKEF DVDQDGNWLL QGWKGRIVYA SCTLVPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-453306762348GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434838.10.0PREDICTED: scarecrow-like protein 33
RefseqXP_018434840.10.0PREDICTED: scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A0D3BTY60.0A0A0D3BTY6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BQC00.0A0A3P6BQC0_BRAOL; Uncharacterized protein
STRINGBo4g065860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein