PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7696_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 624aa    MW: 71894.6 Da    PI: 6.3583
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7696_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.51.1e-1062456212373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 
                 ++lL++cA+a+s+gd++ a  lL ++++ +sp gd+ qRla++f++AL+arl +++  + ++  ++ ++ +++ s+ l+a++++   sP++++ ++   
  RrC7696_p2 245 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPLGDASQRLAHCFANALEARLRGNTGPVIQTYyNVITSVKETASDILKAYRVYLSSSPFVTLMYFFSF 343
                 689***************************************************6555555553888888888************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++Il+a++ +e +H++Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa++++++++pfe+++++++++e+++++e+++
  RrC7696_p2 344 RMILDAAKDAEVLHVVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLAEYCKRFNLPFEYKAIASQHWETIRIDEFDI 442
                 *****************************************************9*****************************9999************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 +pgE+laVn  l+l++l de++  e  +rd+vLkl+++++P+v+v++  + + n++ F  rf ea+++y alfd+++++lpr+++er+  Ere+ gre+
  RrC7696_p2 443 RPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFISRFKEAVYHYYALFDMFDSTLPRDNQERVRFEREFYGREA 541
                 **********************999999*********************************************************************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +nv+ace+ +r+er et+++W+ r+ +aGF++ p++ ++++  +  l+k    + + v+e+s++l++gWk+r+L++ S+W
  RrC7696_p2 542 MNVIACEEGDRVERPETYRQWQVRMVRAGFRQKPVKAEMVELFREKLKKWRyHKDFVVDENSKWLLQGWKGRTLYASSCW 621
                 ************************************************9998999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.008218601IPR005202Transcription factor GRAS
PfamPF035143.8E-104245621IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MDPNLSLNGF EYLDESLFLD SSLDFDRNPS TFFLSDPLLQ PDENDSSNTL LRYVNQILME  60
ESVGDKQSMF YDSLALRKTE EMLQQVITDS KARSFNSVVT SSDASGSISS SSSRGPVNEI  120
VVKSMFSDAE SDLQFRRGLE EARKFLPNSD QWVFNLERPL VESDLSRVKK SHEREVLDLE  180
EVRSSKQSAT NVEDVEVTDM FDKVLLLDGE CDPQTLSTQQ TLSNNKTKSK TKKAKKKKSQ  240
VIDFRTLLTH CAQAISTGDK TTALDLLLQI RQDSSPLGDA SQRLAHCFAN ALEARLRGNT  300
GPVIQTYYNV ITSVKETASD ILKAYRVYLS SSPFVTLMYF FSFRMILDAA KDAEVLHVVD  360
FGILYGFQWP MFIQYMSGRK DVPRKLRITG IELPQRGLRP AERIEETGRR LAEYCKRFNL  420
PFEYKAIASQ HWETIRIDEF DIRPGEVLAV NAGLRLKTLQ DETGGEETCP RDAVLKLIRK  480
MNPDVFVHAI VNGSFNAPFF ISRFKEAVYH YYALFDMFDS TLPRDNQERV RFEREFYGRE  540
AMNVIACEEG DRVERPETYR QWQVRMVRAG FRQKPVKAEM VELFREKLKK WRYHKDFVVD  600
ENSKWLLQGW KGRTLYASSC WVPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-422486218374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439723.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018439724.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018439725.10.0PREDICTED: scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A078HM600.0A0A078HM60_BRANA; BnaC04g15290D protein
STRINGBo4g065830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein