PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC771_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 324aa    MW: 38435 Da    PI: 6.8428
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC771_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.1e-082064240
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               ++r C+++ +k++ ++C +++ +lC+ C ++ H+       H++v
  RrC771_p2 20 RPRDCELCLNKHAVWYCASDDAFLCHVCDESVHRAnqvatkHERV 64
               5788*****************************778888888776 PP
2CCT661.1e-22276318143
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                Rea++ RY++Krk+R+FeKkirYe+RK++A++RpR+KGrFv++
  RrC771_p2 276 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 318
                9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1111966IPR000315B-box-type zinc finger
SMARTSM003365.4E-81966IPR000315B-box-type zinc finger
PfamPF006438.1E-72164IPR000315B-box-type zinc finger
CDDcd000212.27E-92466No hitNo description
PROSITE profilePS5101715.944276318IPR010402CCT domain
PfamPF062031.0E-17276318IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTSHTNIKIM IPEHQEDVKR PRDCELCLNK HAVWYCASDD AFLCHVCDES VHRANQVATK  60
HERVCLKTNE ISNGVLQGTT RKPVWHSWFR RKARTPRVRC EKKLQEKVDD EKRREDPRVP  120
EIGGETNEDD EDLTSLVPEF QGFIEMEFFL SNHDGSEETM RQFNVEHETD AMEDLRYIEE  180
EGKKSGDEAC HDEQSLMSCK NEYDINPTLV ITKTEENAKQ RNMLLRLNYE NVIAAWDKQE  240
SPTTATWYQN EFNNTSNFQL VPPGIEEKKV SNRSEREARV WRYRDKRKNR LFEKKIRYEV  300
RKVNADKRPR MKGRFVRRSF TNDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530061e-109AK353006.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490515.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8
SwissprotQ9M9B31e-156COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLA0A078JLI50.0A0A078JLI5_BRANA; BnaA05g36570D protein
TrEMBLA0A397ZAH60.0A0A397ZAH6_BRACM; Uncharacterized protein
TrEMBLM4ETZ10.0M4ETZ1_BRARP; Uncharacterized protein
STRINGBra032273.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-162B-box type zinc finger protein with CCT domain