PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7762_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 120aa    MW: 14058.7 Da    PI: 9.2604
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7762_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.62.3e-124194356
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                + k++rrk +NRe+ArrsR RK+  + eL      L +eN+ L++el++ ++  
  RrC7762_p1 41 DEKKQRRKVSNRESARRSRMRKRRHLNELWSMLVHLINENRCLIDELSRANEGN 94
                569********************************************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-934115No hitNo description
SMARTSM003381.5E-1139103IPR004827Basic-leucine zipper domain
PfamPF077162.2E-94089IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.341104IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-104392No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MDGFVYNLPG ANPNQQFFNN QVPLVNLSAT SDESNRSADD DEKKQRRKVS NRESARRSRM  60
RKRRHLNELW SMLVHLINEN RCLIDELSRA NEGNENVVEE NKKLREENSN LRKMIGEIGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14563RRKVSNRESARRSRMRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470747.12e-82PREDICTED: basic leucine zipper 8
SwissprotQ9CA462e-52BZIP8_ARATH; Basic leucine zipper 8
TrEMBLA0A0D3AP405e-69A0A0D3AP40_BRAOL; Uncharacterized protein
TrEMBLA0A3N6T1915e-69A0A3N6T191_BRACR; Uncharacterized protein
STRINGBo2g061410.19e-70(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.12e-22basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]