PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7766_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 293aa    MW: 31685.4 Da    PI: 8.083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7766_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066122144123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  RrC7766_p1 122 YECKTCNRTFPSFQALGGHRASH 144
                 99**********99999998887 PP
2zf-C2H213.30.00025198220123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  RrC7766_p1 198 HECSICGSEFTSGQALGGHMRRH 220
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-13121146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-8121144No hitNo description
PROSITE profilePS5015710.554122149IPR007087Zinc finger, C2H2
SMARTSM003550.052122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-8193220No hitNo description
Gene3DG3DSA:3.30.160.600.001196220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11197221IPR007087Zinc finger, C2H2
SMARTSM003550.019198220IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743198220IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVAAAATTI TSTSSSAGGE RTASDGYNSV  60
VSSPVTTTDC TEEEEDMAIC LIMLARGAAP SPLPDLKNST KTDKNLHLKT SSSTENSSFY  120
VYECKTCNRT FPSFQALGGH RASHKKPRAS IDEKAKVPFM QLKSSASEEG QKSHFKVSGP  180
ALASKASNII TSKANKVHEC SICGSEFTSG QALGGHMRRH RTVTNVVSSP VTTAEVSRNS  240
TEEETENLSR SMEHRKYLPL DLNLPAPEDD LRESKFQGIV FSAATPALID CHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103654.10.0PREDICTED: zinc finger protein ZAT5
RefseqXP_013651797.10.0zinc finger protein ZAT5-like
SwissprotQ681X41e-145ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A397YKN80.0A0A397YKN8_BRACM; Uncharacterized protein
STRINGBra011970.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]