PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7857_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

AP2

Protein Properties

Length: 300aa MW: 33188.8 Da PI: 4.5156

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7857_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	24	9.6e-08	56	86	26	55
AP2 26 g.krkrfslgkfgtaeeAakaaiaarkkleg 55 k +r++lg+f taeeA ++ a+k+++g RrC7857_p1 56 SsKGTRVWLGTFNTAEEATLVYDVAAKRIRG 86 34459***********************997 PP
2	AP2	29.6	1.7e-09	198	225	27	54
AP2 27 krkrfslgkfgtaeeAakaaiaarkkle 54 k +r++lg+f taeeAa a++ a+k+++ RrC7857_p1 198 KGTRVWLGTFNTAEEAAMAYDVAAKRIR 225 459**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	13.274	23	94	IPR001471	AP2/ERF domain
SMART	SM00380	5.4E-12	38	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-15	56	95	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.3E-11	57	95	IPR016177	DNA-binding domain
CDD	cd00018	8.19E-16	57	96	No hit	No description
PROSITE profile	PS51032	13.722	163	234	IPR001471	AP2/ERF domain
SMART	SM00380	7.0E-14	178	240	IPR001471	AP2/ERF domain
CDD	cd00018	1.41E-17	187	236	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.5E-17	197	235	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-12	197	235	IPR016177	DNA-binding domain
Pfam	PF00847	6.2E-6	197	225	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDVCNFAPLN YRSGVESGGG GEIEEGATYG EKEEEEHLRR DTQASMRKMS VRDTRSSKGT 60 RVWLGTFNTA EEATLVYDVA AKRIRGDKAK LNFPDLLHPS PLTSDDLPLA KKLCNQSYGF 120 ESGYDLLQQI SSLESFLELD GTTAEQPSQL DENGVESGGG GEIEEGATYG EKKEEESLRR 180 NTQASIGEIG VRDTISSKGT RVWLGTFNTA EEAAMAYDVA AKRIRRDKAK LNFPDLLHPS 240 PLTSDDLPPA KKLCVHSQSE LAHPSSPVEL LWVWEWLRVS ESELRVESGY DLLQQISSLE

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9159183}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9159183}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189317	1e-51	AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018488703.1	4e-47	PREDICTED: ethylene-responsive transcription factor RAP2-3-like
Swissprot	P42736	2e-36	RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBL	M4E079	1e-40	M4E079_BRARP; Uncharacterized protein
STRING	Bra022176.1-P	2e-41	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22495	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	7e-38	ethylene-responsive element binding protein

Publications ? help Back to Top
Bueso E, et al. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J., 2007. 52(6): p. 1052-65 [PMID:17931347] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen YC, et al. Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance. Sci Rep, 2014. 4: p. 5584 [PMID:24998294] Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis. New Phytol., 2015. 208(2): p. 442-55 [PMID:25988998] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Liu W, et al. Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency. Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868 [PMID:28390898] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474]