PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC785_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 207aa    MW: 23887.2 Da    PI: 5.9621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC785_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.81.2e-112872348
        NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
               +GfrF+Ptd+el+  yL++  egk l+  + i++ +iy ++P +L 
  RrC785_p2 28 VGFRFQPTDQELILGYLQPYSEGKALPK-NKIHHQNIYGFHPVQLS 72
               7************************999.77*************96 PP
2NAM27.77.6e-097312778128
        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                ++ g+W+++   k+v+  +++++g k+ ++f+     +g+ pk  kt+W+m ey l
  RrC785_p2  73 AQGGFWHSSTGRKDVFL-GKAVIGKKQHFTFFngkllDGKPPKDGKTTWLMVEYLL 127
                578****99999*****.999***********7777669999999*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.0261170IPR003441NAC domain
SuperFamilySSF1019412.75E-2426169IPR003441NAC domain
PfamPF023654.0E-1428126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVTFDLNLIP EDEEEMDPIK CLPFCKAVGF RFQPTDQELI LGYLQPYSEG KALPKNKIHH  60
QNIYGFHPVQ LSAQGGFWHS STGRKDVFLG KAVIGKKQHF TFFNGKLLDG KPPKDGKTTW  120
LMVEYLLLDA KKSTTTPLME VDSSIDIVNS SSNTKEEQKR HCVLSRIYKS DPVENQTEDY  180
ALLIKQQQEM AIKDEEFWQE MRNEKEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439053.11e-119PREDICTED: uncharacterized protein LOC108811498 isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-16NAC-like, activated by AP3/PI