PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7863_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 190aa MW: 21669.7 Da PI: 4.7045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7863_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	170	186	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp+C k+F+r n++ RrC7863_p3 170 FSCPICFKTFNRYNNMQ 186 89*********988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.5E-4	170	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSNPAYSNLL NNGFDNTNFN SSTSRSYIYN SHNCFYYPNT TNPNYMAPTT STFPNSPPLR 60 EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLNYPHDV TVDLHLGLPN CGVGGSYIAP 120 DATTDEQDDD QGVEVTVDFH LHDDDDGYLH RGHHYWIPTP DQILMGPTQF SCPICFKTFN 180 RYNNMQVPLH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006085	1e-115	AC006085.1 Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete sequence.
GenBank	CP002684	1e-115	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467444.1	1e-135	PREDICTED: zinc finger protein WIP5-like, partial
Swissprot	Q8W031	1e-84	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A078GBV9	1e-108	A0A078GBV9_BRANA; BnaA06g02430D protein
STRING	Bo6g025920.1	1e-108	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	4e-87	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]