PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7897_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 319aa    MW: 36487.1 Da    PI: 4.6896
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7897_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.9e-111252145
                HHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF 21 lKKAeELSvLCdaevaviifsstgk 45
                +KKA+ELS+LCd++v +++fs+ gk
  RrC7897_p1  1 MKKAKELSILCDIDVVLLMFSPAGK 25
                8*********************997 PP
2K-box19.83.4e-08851602190
       K-box  21 lakLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                 ++ L ++++ Lq        R   + ++e+  s+ +LqqLe+ + +sl +iR +K+++l+ q +++q +  e ++e
  RrC7897_p1  85 IEVLSEQVRFLQthlseIHTRLSYWTEVEKVdSIDDLQQLENSVTQSLYQIRVHKENVLHHQQQQQQLMSIECKNE 160
                 55566666666655544444566677777774689********************************999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.75E-12165IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.031125IPR002100Transcription factor, MADS-box
PfamPF003192.6E-9126IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.63378179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKKAKELSIL CDIDVVLLMF SPAGKPSLCC GKHSIGEVIA KFSQLAPQER AKRKLDNLEA  60
LKKTFMKLDH DVNISEFLER SKPTIEVLSE QVRFLQTHLS EIHTRLSYWT EVEKVDSIDD  120
LQQLENSVTQ SLYQIRVHKE NVLHHQQQQQ QLMSIECKNE LQSDIDLDFG IDIEQQLENF  180
SWVRTDENMN APLKEEDPNL QFYHTYKDLT CSASSSLESY SGLFGKSSDI KIPKVETGGN  240
PGPLVDPNLQ YSNLSFLNDP KLQQLAEWNL LGSPADYYVS QILEASYRPQ FGGNWPSSET  300
LNYPFTVFDD PLLSRQPNL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893531e-178AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466350.10.0PREDICTED: agamous-like MADS-box protein AGL30
SwissprotQ1PFA45e-72AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D3CZA50.0A0A0D3CZA5_BRAOL; Uncharacterized protein
TrEMBLA0A397YQF40.0A0A397YQF4_BRACM; Uncharacterized protein
STRINGBo6g109050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-156AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]