PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC78_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 236aa    MW: 26934.1 Da    PI: 4.9446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC78_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-183786255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  RrC78_p6 37 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 86
              79*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-133786IPR001471AP2/ERF domain
CDDcd000184.12E-323793No hitNo description
SuperFamilySSF541712.94E-213795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-283794IPR001471AP2/ERF domain
SMARTSM003802.9E-3237100IPR001471AP2/ERF domain
PROSITE profilePS5103221.2463794IPR001471AP2/ERF domain
PRINTSPR003676.0E-93849IPR001471AP2/ERF domain
PRINTSPR003676.0E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDLNGNSYVS SSSKSKKSHR QKQQQQQPQP QHNEEIKYVG VRRRPWGRYA AEIRNPTTKE  60
RYWLGTFDTA EEAALAYDRA ARSIRGLTAR TNFVYSDMPR GSSVTSFISP DESQRFISEL  120
FNPTSQQEAT SNINNNNLYS STNNQNQNSS ELSYNGWTHE SECGYQSINN NDEHCDHELP  180
PFPPSTCFGA ELMIPETDSY WNVVHASMDT FSFDELDGFV GQNSRFDSSS SPFLYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1934931171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankAC0694710.0AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462950.0DQ446295.1 Arabidopsis thaliana clone pENTR221-At1g28160 ethylene-responsive element-binding family protein (At1g28160) mRNA, complete cds.
GenBankDQ6528640.0DQ652864.1 Arabidopsis thaliana clone 0000018995_0000013096 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448312.11e-176PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ901e-120ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A3N6SY371e-129A0A3N6SY37_BRACR; Uncharacterized protein
TrEMBLA0A3P6DY601e-129A0A3P6DY60_BRAOL; Uncharacterized protein
STRINGBo3g143080.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.19e-94ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]