PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC792_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 240aa MW: 27668.4 Da PI: 9.7705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC792_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.3	3e-29	67	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF +r+++ ++s +++g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkkek+gkw vtk+++eHnH+l RrC792_p4 67 SFYDSYATRTGFVMRVDAFRRStRDDGTVVWRRLVCNKEGFRRSRPRR-DESRKPRAITREGCKALIVVKKEKSGKWTVTKFVKEHNHPLL 156 5***************999978899***************99.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50222	13.481	1	28	IPR002048	EF-hand domain
Pfam	PF00036	1.2E-6	1	23	IPR002048	EF-hand domain
Gene3D	G3DSA:1.10.238.10	3.1E-6	1	24	IPR011992	EF-hand domain pair
SuperFamily	SSF47473	1.17E-5	1	24	IPR011992	EF-hand domain pair
PROSITE pattern	PS00018	0	6	18	IPR018247	EF-Hand 1, calcium-binding site
Pfam	PF03101	3.5E-27	67	156	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005509	Molecular Function	calcium ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MISKVDVDGD GMVNFKEFKQ MMKVEGNLLR GEHAVEMIEN TVTEEASSSV VEPFIGMDFE 60 SEEAAKSFYD SYATRTGFVM RVDAFRRSTR DDGTVVWRRL VCNKEGFRRS RPRRDESRKP 120 RAITREGCKA LIVVKKEKSG KWTVTKFVKE HNHPLLSLLT NNNGRRSSQI SQTPNEKDAK 180 IRELSTELSR ERKRCATLQQ QLDMVLNVME EHSNHLSINI NNVIQNVREI ESNTFTKPLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	114	RRSRPRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489049.1	1e-158	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9SZL8	1e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A397ZFM9	1e-129	A0A397ZFM9_BRACM; Uncharacterized protein
STRING	Bostr.22252s0282.1.p	1e-115	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-105	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]