PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7967_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 98aa    MW: 11264.8 Da    PI: 7.5182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7967_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-08952344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W  +a+ +g +++++++ks++
       RrC7967_p2  9 SWTSTQNKMFERALAFYDKDtpdRWQNVAKAVG-NKSAEEVKSHY 52
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.179256IPR017877Myb-like domain
SMARTSM007171.3E-5658IPR001005SANT/Myb domain
SuperFamilySSF466893.43E-12863IPR009057Homeodomain-like
PfamPF002494.7E-6952IPR001005SANT/Myb domain
CDDcd001671.47E-41652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASSSMSSSW TSTQNKMFER ALAFYDKDTP DRWQNVAKAV GNKSAEEVKS HYDILVEDLM  60
NIEQDLVPLP KYKTVDVGSK SRGINDYDLR LMKNMRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-27198193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893561e-92AC189356.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464048.16e-68PREDICTED: protein RADIALIS-like 5
SwissprotQ8GW753e-55RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A087HPN23e-55A0A087HPN2_ARAAL; Uncharacterized protein
STRINGA0A087HPN24e-56(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.15e-57RAD-like 5