PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7975_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 171aa    MW: 19156.6 Da    PI: 6.7966
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7975_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA28.54.9e-0951733658
   CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58
                +py+heSRh hA++R  g+ GrF
  RrC7975_p1 51 QPYMHESRHLHAINRLIGCRGRF 73
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-151776IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115220.311876IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-65173IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQLMGMHQQV VPLQYDAVEE PVFVNAKQYH GILRLWLVPS LIFVLILLVF QPYMHESRHL  60
HAINRLIGCR GRFLNAKKKN GGRKDEEEED TTSNENTSEA SSSLRSEKSA IAPNVNGVSS  120
AAVGLHSKES RGTGPVDKSH SLFEPEYGDG GCHFLTQLWN THWGFSPREE G
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN3976171e-107FN397617.1 Raphanus sativus Rfo genomic region from maintainer genotype.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442118.11e-90PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
SwissprotQ8VY641e-41NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLA0A3P6BXA12e-47A0A3P6BXA1_BRAOL; Uncharacterized protein
STRINGBo4g039370.12e-47(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.13e-31nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]