PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7996_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 202aa    MW: 22080.3 Da    PI: 4.5365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7996_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-11146191655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +A +Y+k Lq
  RrC7996_p1 146 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLDEALQYVKALQ 191
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-15143198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.38E-12144195No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8146191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-11146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MQSTQDGGGG GKGGGGDEDE EEEDDLKPDL CLTELLTGNS SGTTSRDSFE FPSAAVEQGL  60
YSHQVGFHRQ NSSPADFLSG SAASGSDGFF PNFGIPANYD YLSPNVDVSP AKEQMSGGMM  120
EDNKLLEDSV PFRVRAKRGC ATHPRSIAER VRRTRISDRI RRLQELVPNM DKQTNTADML  180
DEALQYVKAL QSQIQVYLHI CI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915GGKGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117911e-72AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAF4886121e-72AF488612.1 Arabidopsis thaliana clone bHLH080 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0937941e-72AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487262.11e-120PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P82e-86BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A078GPB62e-99A0A078GPB6_BRANA; BnaA05g18250D protein
TrEMBLA0A397ZBJ42e-99A0A397ZBJ4_BRACM; Uncharacterized protein
TrEMBLM4F0282e-99M4F028_BRARP; Uncharacterized protein
STRINGBra034421.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-64bHLH family protein