PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7999_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 385aa MW: 43206.6 Da PI: 8.5358

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7999_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	3.9e-32	211	264	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ RrC7999_p1 211 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 264 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	208	264	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-28	209	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-24	211	264	IPR006447	Myb domain, plants
Pfam	PF00249	5.4E-7	212	263	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009887	Biological Process	organ morphogenesis
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009956	Biological Process	radial pattern formation
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010158	Biological Process	abaxial cell fate specification
GO:0010229	Biological Process	inflorescence development
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSMDGVFLEK PKSNTTTTLP DLSLNISLPD THHNESSKEL SRRSSQTDNN RLSNFELSLS 60 HHNNPSSNPS TRILHFPDRR NLYSNHILHG GSLHQRVDES EINNIHRPIR GIPVYHNRSF 120 PFHQQASPSS SLPSLGGDFS ILNSSSGYNN AYRSLQSSPR LKGVPVHHHN HYGVVGSSDS 180 SYPHHHNHHH HGMVRSRFLP KMPTKRSMRA PRMRWTSSLH ARFVHAVELL GGHERATPKS 240 VLELMDVKDL TLAHVKSHLQ MYRTVKTTNK PAASSDGSGE EEMGIDGNER AQSDDTSPHQ 300 EIDFPPTQPR WSNSSGETWP LSNNCASDID TVIRTSSTSM ISHHQRSSLQ NQDQGANDQG 360 KRCGDLSCNN PSLEFTLGRP DWHEK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSMDGVFLEK PKSNTTTTLP DLSLNISLPD THHNESSKEL SRRSSQTDNN RLSNFELSLS  60
HHNNPSSNPS TRILHFPDRR NLYSNHILHG GSLHQRVDES EINNIHRPIR GIPVYHNRSF  120
PFHQQASPSS SLPSLGGDFS ILNSSSGYNN AYRSLQSSPR LKGVPVHHHN HYGVVGSSDS  180
SYPHHHNHHH HGMVRSRFLP KMPTKRSMRA PRMRWTSSLH ARFVHAVELL GGHERATPKS  240
VLELMDVKDL TLAHVKSHLQ MYRTVKTTNK PAASSDGSGE EEMGIDGNER AQSDDTSPHQ  300
EIDFPPTQPR WSNSSGETWP LSNNCASDID TVIRTSSTSM ISHHQRSSLQ NQDQGANDQG  360
KRCGDLSCNN PSLEFTLGRP DWHEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	212	266	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY030192	0.0	AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds.
GenBank	AY048688	0.0	AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds.
GenBank	BT026436	0.0	BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473266.1	0.0	PREDICTED: transcription repressor KAN1-like
Swissprot	Q93WJ9	0.0	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A0D3B1H9	0.0	A0A0D3B1H9_BRAOL; Uncharacterized protein
STRING	Bo3g012110.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6606	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]