PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC799_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 510aa    MW: 57621.6 Da    PI: 10.0212
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC799_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.7e-17374463198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f+k +++s+v+   +l lp++f+ +h+ k  ++ ++tl de+  +   k+  +k++    l++GW++F+ +++L +gD vvF+l++r++f  +v ++r
  RrC799_p6 374 FIKPMLQSHVTGGFWLGLPRHFCHTHMPK--QDEMITLVDENDDESLTKYLADKNG----LSGGWRGFAIDHQLVDGDAVVFHLINRTTF--KVYIIR 463
                89*********************999744..6779***************777777....*************************98888..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF580382.13E-14124193No hitNo description
SMARTSM003975.7E-6128195IPR000727Target SNARE coiled-coil homology domain
PROSITE profilePS5019213.696133195IPR000727Target SNARE coiled-coil homology domain
Gene3DG3DSA:1.20.5.1103.9E-18133195No hitNo description
CDDcd158411.38E-16136193No hitNo description
PROSITE patternPS009140139178IPR006012Syntaxin/epimorphin, conserved site
PfamPF057393.6E-9170221IPR000727Target SNARE coiled-coil homology domain
Gene3DG3DSA:2.40.330.104.1E-20366463IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-24367463IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-25372463No hitNo description
SMARTSM010191.3E-21374465IPR003340B3 DNA binding domain
PfamPF023621.1E-14374463IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814374465IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005484Molecular FunctionSNAP receptor activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MGSSDAWMRE YNEALKLSED INGMMSERNS SGVTGPDAQR RASAIRRKIT ILGTRLDTLQ  60
SLLVGKQHVS EKEMNRRKDM VGNLRSKANQ VASALNMSNF ANRDSLLGPD TKPDDAMNRV  120
SGMDNQGIVG FQRQVMREQD EGLEKLEETV MSTKHIALAV NEELTLQTRL IEDLDYHVDV  180
TDSRLRRVQK SLAVMNKNMK GGCSCMSMLL SVLGIVGLAL VIWLLVNPTA THSVTQKEGL  240
SRDVRNPRKM VESEYEQIRL KRLEENKKRM IELNLNKLSQ SLRVSSSPSP KPSPAKPRTP  300
RTPVNSSEVR RSSRAKNPPP SYREFGIEPL ERPRRSYQRR DLLNRVYASD DARVYAIHRA  360
EELLSSLDPE FPSFIKPMLQ SHVTGGFWLG LPRHFCHTHM PKQDEMITLV DENDDESLTK  420
YLADKNGLSG GWRGFAIDHQ LVDGDAVVFH LINRTTFKVY IIRVYDESNN GSGVSNDKAL  480
VIVSNKNQEE NVSEAPPLSN SGKRKRRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454609.11e-169PREDICTED: B3 domain-containing protein At3g19184 isoform X2
TrEMBLA0A3P6GF420.0A0A3P6GF42_BRAOL; Uncharacterized protein
STRINGBo6g124000.11e-155(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-104B3 family protein