PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 258aa    MW: 28624.8 Da    PI: 8.2941
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-18172206135
     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
              C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  RrC7_p6 172 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 206
              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.8E-912257IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.266166202IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-15166216IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-14170230No hitNo description
Gene3DG3DSA:3.30.50.101.8E-13170204IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-14171218No hitNo description
PfamPF003203.0E-16172206IPR000679Zinc finger, GATA-type
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDLYGLSSPD MLRIDDLLDF SNEDIFSASS STSTAATSSS SFPPPQNPNF HHHHLPSSAD  60
HSFLHDICVP SDDAAHLEWL SQFVDDSFAD FPANPLGGTM TSVKTETSFP GKPRSKRSRA  120
PAAFAGTWAP MPEYDQQVHV TGKSKPKKEQ SSGGGRHHQS TTETAEGGMR RCTHCASDKT  180
PQWRTGPLGP KTLCNACGVR FKSGRLVPEY RPASSPTFVL TQHSNSHRKV MELRRQKEVM  240
RQPQHVPLHH HHHHHPPF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892420.0AC189242.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB016N13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436974.10.0PREDICTED: GATA transcription factor 2
SwissprotO497411e-135GATA2_ARATH; GATA transcription factor 2
TrEMBLV4LH941e-155V4LH94_EUTSA; GATA transcription factor
STRINGXP_006397685.11e-156(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-121GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]