PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8004_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 52aa    MW: 5952.64 Da    PI: 5.6058
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8004_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA29.41.1e-091130120
        GATA  1 CsnCgttkTplWRrgpdgnk 20
                Cs C+ tkTp+WR gp+g+k
  RrC8004_p3 11 CSECNITKTPMWRGGPSGPK 30
                ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.71E-6429No hitNo description
SMARTSM004010.0071551IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.51531IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.5E-7930IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.3E-71130IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
MEEEKETVRF CSECNITKTP MWRGGPSGPK IFSHFAMHVG SDSGNVEDRS YW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-13GATA transcription factor 23