PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8022_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 130aa    MW: 14422.1 Da    PI: 5.4466
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8022_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.5e-16211051097
                 HHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  10 vlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++s+ l +p  f ++h      +g+ ++ + ++l++  s  +Wevk+  ++++    lt+GW+eF  +++L++gD+v+F++dg+  f  +v+ f
  RrC8022_p1  21 GFQSH-LNIPMAFYSKHikgttdEGN-ANAVVVKLRSdASDLTWEVKM--DGRR----LTQGWQEFTTSHDLRVGDIVIFRHDGDLLF--HVTTF 105
                 55666.99***********9885444.57788999886788*******..9998....***********************8875444..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-235110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-219115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.82911108IPR003340B3 DNA binding domain
CDDcd100171.58E-1612105No hitNo description
SMARTSM010191.1E-1914108IPR003340B3 DNA binding domain
PfamPF023621.5E-102497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MANASASSPT NPHFFQPLLP GFQSHLNIPM AFYSKHIKGT TDEGNANAVV VKLRSDASDL  60
TWEVKMDGRR LTQGWQEFTT SHDLRVGDIV IFRHDGDLLF HVTTFGPSCC EIQYDDDVFQ  120
ISSGTISSTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487473.16e-87PREDICTED: B3 domain-containing protein REM10-like
SwissprotO817785e-51REM9_ARATH; B3 domain-containing protein REM9
TrEMBLA0A3P5Z1E59e-78A0A3P5Z1E5_BRACM; Uncharacterized protein
STRINGBra029892.1-P3e-78(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-53B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Wang S, et al.
    Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006027
    [PMID:27138552]