PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8040_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 186aa MW: 21329.6 Da PI: 9.417

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8040_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.9	1.5e-11	112	144	20	51
S-EEEEEE-STT---EEEEEE-S.SSTTEEEEE CS WRKY 20 fprsYYrCtsagCpvkkkversa.edpkvveit 51 f +sYY+Cts+gCpv+k+ver+a +dpk+++it RrC8040_p2 112 FCKSYYKCTSSGCPVRKHVERQAsHDPKATTIT 144 689*****************9752799988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-16	53	145	IPR003657	WRKY domain
SMART	SM00774	3.1E-6	68	150	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-8	112	144	IPR003657	WRKY domain
Pfam	PF03106	1.8E-8	112	145	IPR003657	WRKY domain
PROSITE profile	PS50811	11.382	114	154	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MWVYREGLWR STTCHRPLSK LVNLNNLLQL TGVVKLRRLD GIMETTPLVK PIREPRVIFQ 60 ILGTIVILYD RNMWDEYGQK VVRGYSNSSL DSLWNWVWNM EDIMLRNVPL AFCKSYYKCT 120 SSGCPVRKHV ERQASHDPKA TTITMYSLQS LAAIMTTSLG SDQMKQTPSA SGVGILSDEH 180 DHSHRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM37833	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	7e-30	WRKY family protein