PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8129_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 209aa    MW: 22692.5 Da    PI: 8.6022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8129_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035124146123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + Cp+Cg  F+    L  H+r+H
  RrC8129_p2 124 HICPICGVEFPMGQALGGHMRKH 146
                 68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-86690No hitNo description
PfamPF139129.7E-106791IPR007087Zinc finger, C2H2
SMARTSM003550.626890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6816895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-8119146No hitNo description
PfamPF139122.4E-11123147IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159124151IPR007087Zinc finger, C2H2
SMARTSM003550.056124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVARRSENLD RTVENTGEKL DGTVEDTAGY KEKLDRTVED KAANCLMLLS RIGENGGGGG  60
GKESRRVYRC KTCMKEFSSF QSLGGHRASH NKHVNNSSSD EQSSLSSGSV AKKKKTTTTN  120
TSRHICPICG VEFPMGQALG GHMRKHRNEE EASGALVTRS FFPEAATTMM ITTLKKSSSG  180
KRVACFDFGP ADSVESGINL ELELGINMY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436507.11e-119PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX852e-66ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3P5YHI81e-108A0A3P5YHI8_BRACM; Uncharacterized protein
STRINGBo3g130310.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-60C2H2 family protein