PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8146_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 315aa    MW: 35555.8 Da    PI: 6.7881
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8146_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.92.4e-841831269374
        GRAS  69 tseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLa 166
                  ++++ + +++a+k fse+sP+l+f+++t Nqa+le+++g +r+HiiDfdi+ G+QW++L+q+L  R++ pp sl+iT ++s  s++  el  t+++L+
  RrC8146_p1  18 LNPYSLIFKISAYKSFSEISPVLQFANFTSNQALLESFHGFNRLHIIDFDIGFGGQWASLMQELVLRDNTPPlSLKITLLAS--SHDDLELGFTQDNLK 114
                 34456999************************************************************99999*********..679************ PP

        GRAS 167 kfAeelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                 +fA+e++++++++vl   +l+ l ++   + + +Ea+aVnl+ + ++        +s    +L++vk+lsP+++v++++ +++++ +F ++++++l+ +
  RrC8146_p1 115 HFASEINISLDIQVL---TLDLLlSFPPPNSSDKEAVAVNLSPSSFSNT------PS---LLLRFVKHLSPTIIVCSDRGCERTDLPFPQQLIHSLQSH 201
                 **************9...444432556667788********99665554......55...89************************************* PP

        GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhet..lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                 +al++sl+a   +  ++++k+Er+l+++ei+++v  + +++r   e+  +++W+++++++GF+pv+ s+++++qa++l+++++++g++ve++++sl+l+
  RrC8146_p1 202 AALLESLDAV-NASLDAMQKIERFLVQPEIEKLVLDRSSSSRRPVERpmMMTWQAMFMQMGFSPVAHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLC 299
                 *******887.34559*******************9988855544432289************************************************ PP

        GRAS 362 WkdrpLvsvSaWr 374
                 W++r+Lv vSaWr
  RrC8146_p1 300 WQRRELVGVSAWR 312
                 ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.8611292IPR005202Transcription factor GRAS
PfamPF035148.5E-8218312IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
ALHSCLLHNN TTQQQPLLNP YSLIFKISAY KSFSEISPVL QFANFTSNQA LLESFHGFNR  60
LHIIDFDIGF GGQWASLMQE LVLRDNTPPL SLKITLLASS HDDLELGFTQ DNLKHFASEI  120
NISLDIQVLT LDLLLSFPPP NSSDKEAVAV NLSPSSFSNT PSLLLRFVKH LSPTIIVCSD  180
RGCERTDLPF PQQLIHSLQS HAALLESLDA VNASLDAMQK IERFLVQPEI EKLVLDRSSS  240
SRRPVERPMM MTWQAMFMQM GFSPVAHSNF TESQAECLVQ RTPVRGFHVE KKHNSLLLCW  300
QRRELVGVSA WRCRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-273031280375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457749.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A1J3J2570.0A0A1J3J257_NOCCA; Scarecrow-like protein 6
STRINGBostr.14547s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-162GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]