PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8165_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 267aa MW: 28120.7 Da PI: 6.5187

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8165_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.4e-06	88	123	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ri +++ L+el+P+ K +Ka++L + +eY++ Lq RrC8165_p3 88 RIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 123 8999*********7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.357	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-6	84	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-6	87	127	No hit	No description
SuperFamily	SSF47459	2.36E-10	87	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-11	88	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MLSSLPPCWD SSLPPPHPPP PPPPQSLLHA LTVDASFPDQ SQVAQAKMGC RYKEQSPPRA 60 HLWPVRSQGS ELGEAKPQIL TALLSGERIA ERMKSLQELV PNTNKTDKAS MLDEIIEYVR 120 FLQLQVKVLS VSRLGGARAA GGPGFNGLTS EVGGRLNALS GPSNGVNGNR NGTGSSNESL 180 RSTEQRVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAISS SSTASSHSRG SLFNPSLNVV 240 AAEETNVAVA AAEASTSMDD DVSASKT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866244.1	1e-106	transcription factor bHLH82
Swissprot	Q9LSQ3	1e-105	BH082_ARATH; Transcription factor bHLH82
TrEMBL	D7MNY8	1e-104	D7MNY8_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh1_pm.C_scaffold_8001435	1e-105	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11585	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-71	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]