PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8182_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 248aa MW: 28102.4 Da PI: 4.8394

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8182_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	88.5	1.2e-27	5	81	1	78
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhPtdeel+++yL++kv+++ ++ +++ +vd++k+ePwdLp+k++ +ekewyfF+ rd+ky+tg r+n + RrC8182_p3 5 LPPGFRFHPTDEELITQYLCRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFCLRDRKYPTGLRTNEQL 81 79***********************999.88***********999999******************9864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-30	3	100	IPR003441	NAC domain
PROSITE profile	PS51005	22.711	5	171	IPR003441	NAC domain
Pfam	PF02365	6.6E-12	6	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEEKLPPGFR FHPTDEELIT QYLCRKVSDT GFTGKAVVDV DLNKCEPWDL PAKASMGEKE 60 WYFFCLRDRK YPTGLRTNEQ LKPVIGKPQE EWVVCRVFEK STAAKKPQEQ QPQSSFGSPC 120 DANSSMANEF EDIELQNMNT NSSTIDYNHI HQYSQNCTYS EDNTVSKAGL NMNMVTDIPS 180 WSTTSLLGQP LSPINSLLLK AFQIRNSYSF TNINPSTLQQ GVSNVMRKGS SSSQPQPQEE 240 AFNMDSIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-27	5	79	17	91	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-27	5	79	17	91	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-27	5	79	17	91	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-27	5	79	17	91	NO APICAL MERISTEM PROTEIN
4dul_A	2e-27	5	79	17	91	NAC domain-containing protein 19
4dul_B	2e-27	5	79	17	91	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026658	1e-69	AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBank	CP002686	1e-69	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492387.1	1e-155	PREDICTED: NAC domain-containing protein 92-like
TrEMBL	A0A3N6Q9Q4	1e-145	A0A3N6Q9Q4_BRACR; Uncharacterized protein
STRING	Bo3g071500.1	1e-144	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5527	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-118	NAC domain containing protein 58