PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8188_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 277aa MW: 31116.1 Da PI: 9.0827

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8188_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53.2	6.7e-17	207	252	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++++r++kNRe+A+rsR+RK+a+++eLe kv +Le+eN++L+ +l e RrC8188_p3 207 RKQKRMIKNRESASRSRARKQAYTQELEIKVSSLEEENQKLR-RLME 252 689**************************************9.5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-9	202	259	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	205	252	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-11	207	251	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.3E-14	207	249	No hit	No description
Pfam	PF00170	8.2E-14	207	249	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.64E-20	207	252	No hit	No description
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGSLRGNVEE PIHQSLPRQN SLYSLKLHEV QTHFGSSSKP LGSMNLDELL KSVWSAEATQ 60 PPEGTEEGGI TRQGSLTLPR GLSRKTVEDV WRDIQQDKNG CSSNNPNKQP TFGEITLEDL 120 LLKAGVVTEA MTVPQNVVNV ASNGQWAQYQ HQPQHQGFMP YPVCDMQEMV SPTSFVMGGL 180 SDTPPQAHGR KRVASSGGEF VERIVERKQK RMIKNRESAS RSRARKQAYT QELEIKVSSL 240 EEENQKLRRL MEVEKILPSE PPPEPKWKLR RTNSASF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483470.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2
Swissprot	Q9C5Q2	1e-138	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A397ZQB4	1e-173	A0A397ZQB4_BRACM; Uncharacterized protein
STRING	Bra016953.1-P	1e-169	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	1e-130	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]