PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC81_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 187aa    MW: 22308.5 Da    PI: 10.3074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC81_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.7e-11104142348
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                +GV++ k + +W A I++      +++++lg+f + eeAa+++++
  RrC81_p8 104 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDR 142
               79**96.5.7*********6.....6******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-5103142IPR001471AP2/ERF domain
SMARTSM003806.0E-4103153IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-8104143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-6105142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MITGIPNPNG VAAYSPVPKE ELLRHYLFWF WQKTPIVEGS RSQRQRTPSK YLMQFRSDSS  60
AISPDDYGSI SPKMEQDVCD SDQPLKRRKR HRRKQVKNQE PCLMRGVYYK NMKWQAAIKV  120
EKRQIHLGTF SSQEEAARLY DREPNFELSE EDKRKLKQQS WEGFLACTRR KIINKKPKRR  180
MEQEELE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0793491e-59AL079349.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F25G13, partial sequence (ESSA project).
GenBankAL1615351e-59AL161535.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35.
GenBankCP0026871e-59CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451857.11e-112PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451859.11e-112PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451860.11e-112PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451861.11e-112PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
SwissprotQ56XP96e-64ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A078IFC51e-100A0A078IFC5_BRANA; BnaC08g08940D protein
TrEMBLA0A0D3DLF61e-100A0A0D3DLF6_BRAOL; Uncharacterized protein
STRINGBo8g033910.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-58ERF family protein