PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8299_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 25407.9 Da PI: 9.7726

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8299_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	65	117	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL rq+ vWFqNrRa++k RrC8299_p1 65 KKRLTSGQLASLEQSFQEEVKLDSDRKLKLSRELGLHPRQIAVWFQNRRARWK 117 45699***********************************************9 PP
2	HD-ZIP_I/II	110.3	1.3e-35	64	153	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev..eeLre 89 kk+rl++ q+++LE+sF+ee kL+++rK +l+reLgl+prq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev ++Lr+ RrC8299_p1 64 KKKRLTSGQLASLEQSFQEEVKLDSDRKLKLSRELGLHPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDIVSREKQMLHEEVcvTKLRA 153 9*******************************************************************************9962256665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.01E-18	50	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-19	57	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	59	119	IPR001356	Homeobox domain
SMART	SM00389	4.3E-17	61	123	IPR001356	Homeobox domain
CDD	cd00086	3.12E-14	64	120	No hit	No description
Pfam	PF00046	1.9E-16	65	117	IPR001356	Homeobox domain
PRINTS	PR00031	8.0E-5	90	99	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	94	117	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.0E-5	99	115	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEWSMTSNVE NYFVSSWDQK CNKLKPGNSY THTDTQTGPV ISVPESEKII NAYRFPSNKK 60 EMIKKKRLTS GQLASLEQSF QEEVKLDSDR KLKLSRELGL HPRQIAVWFQ NRRARWKAKQ 120 LEQLYDSLRQ EYDIVSREKQ MLHEEVCVTK LRAVLRDQRL IKKQISGGEN TTEIPSVVIA 180 QPRMENLNSN QISGGNKIYG IDQYNNPMVV ASSCWPPYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF939590	1e-118	KF939590.1 Cardamine hirsuta LMI1 (LMI1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458412.1	1e-134	PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X1
Refseq	XP_018458414.1	1e-134	PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X1
Swissprot	Q9LZR0	1e-114	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A0D3AHN8	1e-122	A0A0D3AHN8_BRAOL; Uncharacterized protein
STRING	Bo2g005230.1	1e-122	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-116	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]