PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8349_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 92aa    MW: 9211.09 Da    PI: 4.1942
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8349_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer80.91.5e-254792248
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgC 48
                 +k+rY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgC
   RrC8349_p2 47 SKIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGC 92
                 579**************************9.999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-194992IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-234992IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-225092IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.0445192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MNFEEQEEEM EMSGVNPTGG YDSLSGEGAT SSGGGGGGGG IKSVGGSKIR YRECLKNHAV  60
NIGGHAVDGC CEFMPSGEDG SLDALKCAAC GC
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469960.17e-60PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9SB618e-39ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLE4MXL45e-37E4MXL4_EUTHA; mRNA, clone: RTFL01-39-I06
TrEMBLV4LVY85e-37V4LVY8_EUTSA; Uncharacterized protein
STRINGCagra.2197s0042.1.p7e-38(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-30homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]