PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8403_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 642aa    MW: 72426.5 Da    PI: 6.1032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8403_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.5e-53141411128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++s k+
  RrC8403_p1  14 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKS-KK 110
                 699***************************.99***************6448899999**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +g+kktLvfy+grap+ge+t+W+mheyr+
  RrC8403_p1 111 MIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 141
                 99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-645164IPR003441NAC domain
PROSITE profilePS5100558.70214164IPR003441NAC domain
PfamPF023652.1E-2715140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MTTETQATLS METLPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP  60
GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV  120
FYRGRAPRGE RTNWIMHEYR ATDKDLDGTG PGQNPYVLCR LFHKPSDVAA NCDEVENVNA  180
TPTTTRCSRE DNNNSSEMFQ ETAASRVHAQ NISDDTERCP SDKGSDVKPD DDAPVIKTEK  240
SVGHAETSRA RDRVSGKSIV EESPFARDFS SLYGPSFAQT GDQTYTPAPH ASIGFPASHM  300
DSMYSSDFGN CHYGLHFQDG AAIQDESLAD VLDEVFHNQS ASQGKDFALP KMMHWSFPKD  360
TFGFVNGGAT AEASSFPQFV PDVGASRLVS DHHYVDSKEA VEIQSSSGSS RTFTPLHSNV  420
LGQYPPVSYA TMDPFNSNVN QREQSSFEQQ LPVDRNISPN ELNARPRENQ TDLDLLVNQG  480
TAPRRIRLQM EQPLTPVNNE EERDVDNHEE DEVQSAMTKI VEESEKCLLD KDKSRAPGHP  540
SLSESRTQGT AHRRIRLQTR IRKLPRAPNN TGRDSDHSEE VETHSKEKED VSASSSSSWQ  600
KQKRLMRKRL VQCSSMVIIM TVMVLLVGIW KESRDAKLLS DT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-4711667170NAC domain-containing protein 19
3swm_B9e-4711667170NAC domain-containing protein 19
3swm_C9e-4711667170NAC domain-containing protein 19
3swm_D9e-4711667170NAC domain-containing protein 19
3swp_A9e-4711667170NAC domain-containing protein 19
3swp_B9e-4711667170NAC domain-containing protein 19
3swp_C9e-4711667170NAC domain-containing protein 19
3swp_D9e-4711667170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382690.0KF738269.1 Brassica napus NAC transcription factor 14 (NAC14.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485403.10.0PREDICTED: NAC domain-containing protein 14
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A078JK120.0A0A078JK12_BRANA; BnaCnng49700D protein
TrEMBLA0A0D3CGK80.0A0A0D3CGK8_BRAOL; Uncharacterized protein
STRINGBo5g086780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.10.0NAC 014