PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC841_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 209aa MW: 23512.4 Da PI: 6.7874

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC841_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.8	1.6e-24	36	84	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+++s+rqvtfskRr+g++KKA ELSvLC+a++ +i fs +g+++++ RrC841_p5 36 KPINEESRRQVTFSKRRKGLFKKAAELSVLCGAQIGIITFSRRGRIFTF 84 6899********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.862	28	88	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-28	28	87	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-23	29	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-21	30	50	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-23	38	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-21	50	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-21	65	86	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MEDGEPSSTS TCLPLTAQKP QQNPKTTKGR QKIEIKPINE ESRRQVTFSK RRKGLFKKAA 60 ELSVLCGAQI GIITFSRRGR IFTFGNVDTL AETYLRKAPV TLRSHPGGGD GGEDKWWERA 120 VESVPEEEME EYMAALSGLR DNLWTRICQM GGDHRTVQMD APVFQNPTAE IEWKATDENL 180 TVRNDQSQAG NDGYLDIHAE VPFLSQSRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456737.1	1e-142	PREDICTED: MADS-box transcription factor 23-like
Refseq	XP_018456752.1	1e-142	PREDICTED: MADS-box transcription factor 23-like
TrEMBL	A0A3P6G0K7	1e-108	A0A3P6G0K7_BRAOL; Uncharacterized protein
STRING	Bo6g115840.1	1e-107	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	2e-66	M-type_MADS family protein