PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8501_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 118aa    MW: 13289.9 Da    PI: 9.1631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8501_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-201464155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s+ykGVr ++ +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  RrC8501_p1 14 SKYKGVRKRR-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 64
                89*****887.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-121464IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-211473IPR016177DNA-binding domain
PROSITE profilePS5103222.0231572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-291573IPR001471AP2/ERF domain
SMARTSM003808.3E-321578IPR001471AP2/ERF domain
PRINTSPR003676.6E-101627IPR001471AP2/ERF domain
CDDcd000185.54E-241873No hitNo description
PRINTSPR003676.6E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEEGPSSSSS SMKSKYKGVR KRRWGKWVSE IRLPNSRERI WLGSYDTPEK AARAFDAALF  60
CLRGSGASFN FPEKPPVISG WQNMSRSEIR EAAARFANAE ETSVAGREEK EESEELVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-17180180Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435384.18e-63PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-55ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A397YB545e-54A0A397YB54_BRACM; Uncharacterized protein
STRINGBra025719.1-P2e-54(Brassica rapa)
STRINGBra031069.1-P7e-54(Brassica rapa)
STRINGBo8g102870.15e-54(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]