PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC854_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 345aa    MW: 39304.6 Da    PI: 6.0542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC854_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53211601129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                lppGfrFhPtdee+++ yLk+kv ++++++  ++ e+d++k+ePwdLp+            ++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgk
  RrC854_p7  21 LPPGFRFHPTDEEIISSYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPNscflffllvhieMAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGK 119
                79*************************999.67***************6699*****99976666999******************************** PP

        NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                dke+++ kg lvg+kktLvfy+grap+gekt+Wvmheyrle
  RrC854_p7 120 DKEIFKGKGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 160
                ******9********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5818185IPR003441NAC domain
PROSITE profilePS5100556.21821184IPR003441NAC domain
PfamPF023651.1E-2822159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIISSYLK EKVLDSRFTA VAMGEADLNK  60
CEPWDLPNSC FLFFLLVHIE MAKMGEKEFY FFCQRDRKYP TGMRTNRATE SGYWKATGKD  120
KEIFKGKGCL VGMKKTLVFY RGRAPRGEKT NWVMHEYRLE GIYSYHNLPK TARDEWVVCR  180
VFHKNNPSTT TQQMTRIPTG DLTRTDSLEN IDHFLDFSSL PPLIDPSFTG QPNFKPINPP  240
TYDTPSPIQL HQFNSSYQPI FNHQGFGSAS GSGSTYYNNR EMIKMEQSLI SVSQETCLSS  300
DVNATTTMEV SSGPVMKQEM SMMGMVNGSK SYEDLCDLRG ILWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-481918618170NAC domain-containing protein 19
3swm_B2e-481918618170NAC domain-containing protein 19
3swm_C2e-481918618170NAC domain-containing protein 19
3swm_D2e-481918618170NAC domain-containing protein 19
3swp_A2e-481918618170NAC domain-containing protein 19
3swp_B2e-481918618170NAC domain-containing protein 19
3swp_C2e-481918618170NAC domain-containing protein 19
3swp_D2e-481918618170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413570.0KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473507.10.0PREDICTED: NAC domain-containing protein 79-like
SwissprotQ9FK440.0NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A078IQ520.0A0A078IQ52_BRANA; BnaA03g07000D protein
STRINGBra006449.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.20.0Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]