PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC859_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BES1

Protein Properties

Length: 208aa MW: 22922.5 Da PI: 9.8622

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC859_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	78	2.8e-24	77	125	1	49
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnne 49 gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+ RrC859_p1 77 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMND 125 689*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.4E-22	78	125	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MHTLNTTTTG SQDPIDPNRN LDPDQYPHHR NPNHPQSRRP RGFAATAAAA SMGQADSDVN 60 NGNITGETSS GGGGGGGGKG KREREKEKER TKLRERHRRA ITSRMLAGLR QYGNFPLPAR 120 ADMNDFPTRS IESPLSSTTL KKAALDCPQH PSLRIDENLS PVSLDSVVIA ESGDGISRVW 180 RECIWKCYDL VTTVGFGDWK KQSRHILH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442032.1	9e-78	PREDICTED: beta-amylase 8 isoform X2
Swissprot	Q9FH80	8e-43	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A3P6ASJ0	7e-68	A0A3P6ASJ0_BRACM; Beta-amylase
STRING	Bo2g127050.1	1e-65	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10888	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	1e-38	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]