PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8634_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 241aa MW: 26847.7 Da PI: 6.8042

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8634_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.8e-19	64	113	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g RrC8634_p1 64 SYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 113 6***888.******854...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.6E-13	64	113	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.578	64	121	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.4E-31	64	122	IPR001471	AP2/ERF domain
SMART	SM00380	5.3E-36	64	127	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	64	121	IPR016177	DNA-binding domain
PRINTS	PR00367	1.1E-10	65	76	IPR001471	AP2/ERF domain
CDD	cd00018	1.37E-31	65	123	No hit	No description
PRINTS	PR00367	1.1E-10	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MKRHINVGSS ATHHQEDNNA SVITTTTVAA VTSQKSWSSK RYLVQAGGKR RKSDGGNDNK 60 NPTSYRGVRK RSWGKWVSEI REPKKKSRIW LGTYPTAEMA ARAHDVAALA IKGNSGYLNF 120 PELSGLLPRP VSCSPKDIQA AAAKAAEVIW QEPVIDEKLA NELSHSELST TQSSTSSSFV 180 FSSDTLDTLS TDKESNEETV FDLPDLFTEG FMNHNDSFRY YESTTTWQLY GKDVEFAWLD 240 D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-15	65	121	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189319	1e-169	AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013651981.1	1e-143	ethylene-responsive transcription factor ERF035
Swissprot	Q9M210	2e-96	ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBL	A0A3P6BEL8	1e-142	A0A3P6BEL8_BRACM; Uncharacterized protein
STRING	Bra003415.1-P	1e-141	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60490.1	2e-89	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]