PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8701_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 377aa    MW: 42343.6 Da    PI: 6.3444
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8701_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS194.56.6e-60272792244
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaN 99 
                 ++lLl+cA+a++s+d++laq++++ +++las+dgd++qRla+ +++AL +r a +++  y  l++ + s+++ +  ++  l  f++++P+++f++++aN
  RrC8701_p2  27 EQLLLHCANAIESNDATLAQQTIWVINNLASSDGDSTQRLASSLLRALISRAATKSPAFYF-LHAAPVSQEKlHRFSVIELASFVDLTPWHRFGFIAAN 124
                 79****************************************************8888884.555544433314444444455**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrled 188
                  aIl+av+g + vHi+D+++++++Q p+L++++a++     ++pp l++T+v ++++       ++ee+g +L +fA++ ++ +ef+++   +++ l++
  RrC8701_p2 125 AAILDAVKGYSSVHIVDLSLTHCMQIPTLIDSMATKLinkgQPPPLLKLTVVLAESPPpplLGISYEELGLKLVSFATTRNIAMEFRIIyssYSDGLSS 223
                 **********************************99988878899*******9988778888999***********************95544455666 PP

        GRAS 189 leleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                 l +e+Lr++p   +Eal+Vn++++lh++++e++s++   + +Lk +++l+P++v v++q
  RrC8701_p2 224 L-IEQLRLDPlvcNEALVVNCHMMLHYIPHETLSSSR--SFFLKELRDLNPTIVKVTHQ 279
                 6.9**************************88877766..9**************99886 PP
2GRAS44.72.2e-14289376282365
        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgslvlgWkdr 365
                 r+++E+  +g++i nvva+eg+er+er e +++W er++ea F  v ++e++  ++k++l++++ ++g++ +    ++ + +vl+Wk++
  RrC8701_p2 289 RHWYEAD-IGWRIDNVVAKEGDERVERLEPKSRWFERMREAEFIGVGFGEEVGREVKTMLEEHAsGWGMKKDvddnDDVERFVLTWKGH 376
                 7788888.9*******************************************************9999888854434467899***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.2661377IPR005202Transcription factor GRAS
PfamPF035142.3E-5727279IPR005202Transcription factor GRAS
PfamPF035147.7E-12289376IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MILNPTRPVW PGFSSSKSLC GDANCMEQLL LHCANAIESN DATLAQQTIW VINNLASSDG  60
DSTQRLASSL LRALISRAAT KSPAFYFLHA APVSQEKLHR FSVIELASFV DLTPWHRFGF  120
IAANAAILDA VKGYSSVHIV DLSLTHCMQI PTLIDSMATK LINKGQPPPL LKLTVVLAES  180
PPPPLLGISY EELGLKLVSF ATTRNIAMEF RIIYSSYSDG LSSLIEQLRL DPLVCNEALV  240
VNCHMMLHYI PHETLSSSRS FFLKELRDLN PTIVKVTHQL HVDPLRHGRH WYEADIGWRI  300
DNVVAKEGDE RVERLEPKSR WFERMREAEF IGVGFGEEVG REVKTMLEEH ASGWGMKKDV  360
DDNDDVERFV LTWKGHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-361135672448Protein SHORT-ROOT
5b3h_B1e-361135618394Protein SHORT-ROOT
5b3h_E1e-361135618394Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439246.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-161SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078FIM70.0A0A078FIM7_BRANA; BnaC07g15890D protein
TrEMBLA0A0D3D8470.0A0A0D3D847_BRAOL; Uncharacterized protein
STRINGBo7g063640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-148GRAS family protein