PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8798_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 79aa MW: 9138.83 Da PI: 9.6566

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8798_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.7	1.1e-20	33	79	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+C+kdC+++pyfp ++p kfa++h+++Ga nv+k+l+ RrC8798_p1 33 RCAACKYLRRRCPKDCIFSPYFPPSDPDKFACIHRIYGAGNVSKMLQ 79 6********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.20	1.9E-4	3	49	No hit	No description
PROSITE profile	PS50891	16.794	32	79	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-19	33	79	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MVSCFNQAIE LSDVKFMQEK KLTEKKSVMN PKRCAACKYL RRRCPKDCIF SPYFPPSDPD 60 KFACIHRIYG AGNVSKMLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-16	34	78	12	56	LOB family transfactor Ramosa2.1
5ly0_B	1e-16	34	78	12	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026648	1e-54	AB026648.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15.
GenBank	CP002686	1e-54	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBank	X98130	1e-54	X98130.1 Arabidopsis thaliana 81kb genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483059.1	3e-33	PREDICTED: LOB domain-containing protein 23
Swissprot	P59467	5e-32	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	5e-32	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A398A7B9	2e-31	A0A398A7B9_BRACM; Uncharacterized protein
STRING	Bo7g083780.1	7e-32	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-34	LOB domain-containing protein 24