PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC883_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 239aa    MW: 27934 Da    PI: 5.256
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC883_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35421332102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed++++e+isw+e+g+ f+v+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++++         weF+++ F+kg++el+++i+
     RrC883_p2  42 FLVKTYKVVEDPTTNEVISWNEDGTGFIVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVSTTR---------WEFSNEMFRKGQRELMCNIR 129
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
     RrC883_p2 130 RRKS 133
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3732126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-3337131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5738131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-184265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEDDHLRCND NTNNEEERLP LDFMTGKQTY TAELQPQQPP PFLVKTYKVV EDPTTNEVIS  60
WNEDGTGFIV WQPAEFARDL LPTLFKHCNF SSFVRQLNTY GFRKVSTTRW EFSNEMFRKG  120
QRELMCNIRR RKSCPHSHSH NKSHQVVPIT TREKQEDHHL EDQRSSSTSS SSVYSALLDE  180
NKCLKNENEF LSSELGKTKK KCKQLMELVE RYRGEDEEGE TDDDDSDDQG LKLFGVKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B8e-22401343108Heat shock factor protein 2
5d8l_B8e-22401343108Heat shock factor protein 2
5d8l_D8e-22401343108Heat shock factor protein 2
5d8l_F8e-22401343108Heat shock factor protein 2
5d8l_H8e-22401343108Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476058.11e-154PREDICTED: heat stress transcription factor B-3
SwissprotO222301e-126HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0D3B6A01e-140A0A0D3B6A0_BRAOL; Uncharacterized protein
STRINGBo3g035750.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-120heat shock transcription factor B3