PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8888_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 169aa    MW: 18630 Da    PI: 6.7691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8888_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.1e-1786133152
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 
                 +++kGVr+++ +g+W AeI+dp     +  +r +lg+f ta++Aaka++ a+  
  RrC8888_p2  86 KKHKGVRQKP-SGKWCAEIWDP-----SlhRRRWLGTFPTAKMAAKAYDDAAAD 133
                 589*****99.7*********9.....445********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-987133IPR001471AP2/ERF domain
PROSITE profilePS5103218.80887149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-2087139IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1487139IPR016177DNA-binding domain
SMARTSM003804.2E-2387152IPR001471AP2/ERF domain
PRINTSPR003673.0E-68899IPR001471AP2/ERF domain
CDDcd000181.11E-1590122No hitNo description
PRINTSPR003673.0E-6110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDQSENLPSC NQKPTRLTRD QEHVIMVSAL RQVISNGLGD TSSSNSVAFE ALHQPLDAGP  60
CPLCNITGCH GCAFPVHEEI EKEKEKKHKG VRQKPSGKWC AEIWDPSLHR RRWLGTFPTA  120
KMAAKAYDDA AADLVQRKAA RRCGSMNGEE PTTTTVEEDE GEIFGPVSK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481212.11e-86PREDICTED: ethylene-responsive transcription factor ERF120-like
SwissprotQ9SK671e-60EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A3P6A8C91e-79A0A3P6A8C9_BRACM; Uncharacterized protein
TrEMBLM4DRE41e-79M4DRE4_BRARP; Uncharacterized protein
STRINGBra019087.1-P2e-80(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.13e-48ERF family protein