PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8984_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 431aa MW: 48571.8 Da PI: 7.0638

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8984_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.2	1.3e-39	6	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk.. 95 +G+rF+Pt ee++++yLk+k+ +k+ ++e+i+e++i+ ++P++Lp +k+++++ wyfF++r+ +++ ++k ++r+t sgyWkatg d++v++k RrC8984_p1 6 VGYRFSPTGEEVINYYLKNKILDKPWLVNEAINEINICAYDPESLPslSKLESKDLVWYFFTPREYHASekKKKGTKRTTPSGYWKATGVDRKVKDKrg 104 7**********************999899***********5447777888****98877224567899**************977 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++g+kktLv+++g++ +g+ t Wvmhey++ RrC8984_p1 105 NGVEIGIKKTLVYHHGKSANGVWTPWVMHEYHI 137 7788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.327	4	155	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-44	5	155	IPR003441	NAC domain
Pfam	PF02365	1.3E-23	6	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MERNLVGYRF SPTGEEVINY YLKNKILDKP WLVNEAINEI NICAYDPESL PSLSKLESKD 60 LVWYFFTPRE YHASEKKKKG TKRTTPSGYW KATGVDRKVK DKRGNGVEIG IKKTLVYHHG 120 KSANGVWTPW VMHEYHITSL PPTQRNYVIC QVMYKGADGD SLYGNNSNEL VSASNTGRVI 180 NTAPEAEQRR DKDLYISVDD LANPLNEQDD VSLFNPDTIF NDSYCPYLQP QAPWDDDYIN 240 ELLSFNGGNH TDVLGDLDIT MQEHRNDHRP KKALTGIIVG CSSDSDDAES ISATSYQGTS 300 SPDSFHSLSG KFHSSADEIP SLRKDSVTDI QLPAETSING KTRKSRRTIP SKLEVKEGKP 360 KVINASMEKK SSASLSILKT EKMGWFITEE PVDRRTRKNP PYIYLMNMII GFILLMAVIS 420 NLISVLQSVK T

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MERNLVGYRF SPTGEEVINY YLKNKILDKP WLVNEAINEI NICAYDPESL PSLSKLESKD  60
LVWYFFTPRE YHASEKKKKG TKRTTPSGYW KATGVDRKVK DKRGNGVEIG IKKTLVYHHG  120
KSANGVWTPW VMHEYHITSL PPTQRNYVIC QVMYKGADGD SLYGNNSNEL VSASNTGRVI  180
NTAPEAEQRR DKDLYISVDD LANPLNEQDD VSLFNPDTIF NDSYCPYLQP QAPWDDDYIN  240
ELLSFNGGNH TDVLGDLDIT MQEHRNDHRP KKALTGIIVG CSSDSDDAES ISATSYQGTS  300
SPDSFHSLSG KFHSSADEIP SLRKDSVTDI QLPAETSING KTRKSRRTIP SKLEVKEGKP  360
KVINASMEKK SSASLSILKT EKMGWFITEE PVDRRTRKNP PYIYLMNMII GFILLMAVIS  420
NLISVLQSVK T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-21	7	155	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-21	7	155	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-21	7	155	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-21	7	155	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	7	155	23	168	NAC domain-containing protein 19
3swm_B	2e-21	7	155	23	168	NAC domain-containing protein 19
3swm_C	2e-21	7	155	23	168	NAC domain-containing protein 19
3swm_D	2e-21	7	155	23	168	NAC domain-containing protein 19
3swp_A	2e-21	7	155	23	168	NAC domain-containing protein 19
3swp_B	2e-21	7	155	23	168	NAC domain-containing protein 19
3swp_C	2e-21	7	155	23	168	NAC domain-containing protein 19
3swp_D	2e-21	7	155	23	168	NAC domain-containing protein 19
4dul_A	1e-21	7	155	20	165	NAC domain-containing protein 19
4dul_B	1e-21	7	155	20	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ420439	0.0	KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457689.1	0.0	PREDICTED: NAC domain-containing protein 69-like
Swissprot	Q9M126	1e-154	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A3P6E8A7	0.0	A0A3P6E8A7_BRAOL; Uncharacterized protein
STRING	Bo9g004100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-136	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]