PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9040_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 252aa    MW: 29061 Da    PI: 7.0221
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9040_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.71.9e-101060251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51
                ri n + r++ + +R +g++ K +EL +LC+ ++++ if   ++kl  ++s
  RrC9040_p1 10 RIANPRERKTAYKRRVQGLINKVKELTILCGSDACLTIFNRdDNKLVAWPS 60
                899*********************************999862678988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.32149IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-11160IPR002100Transcription factor, MADS-box
CDDcd002662.34E-22283No hitNo description
SuperFamilySSF554551.31E-18395IPR002100Transcription factor, MADS-box
PfamPF003191.9E-121058IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAREKMKLTR IANPRERKTA YKRRVQGLIN KVKELTILCG SDACLTIFNR DDNKLVAWPS  60
PQVAESLMDR FYSLPSFERT IKAETQESFI KTNMKKMEKK LVDCRERVAE LEVEHLMFQL  120
DNGRRVDDLS QTEAKILKSY TNKRIMGLNK KLGYPEHAYT SVKEPFLRDG IPRVWDAAFE  180
QGYCSSLTES SCIYFLDKWF FDDPKVQEHG DDGTHLPTLV HRFDLNKEPS DDEEALETYK  240
GESSKSGGAS DA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467252.10.0PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLA0A078FI321e-134A0A078FI32_BRANA; BnaC02g01970D protein
TrEMBLA0A0D3AHZ11e-134A0A0D3AHZ1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CXW21e-134A0A3P6CXW2_BRAOL; Uncharacterized protein
STRINGBo2g007250.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.15e-69AGAMOUS-like 96