PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC904_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 550aa    MW: 60629.3 Da    PI: 7.7777
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC904_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.7e-08231251526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd+C +aHg
  RrC904_p3 231 PCPEFRK-GSCPKGDSCEYAHG 251
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.26E-127125IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0224575IPR002110Ankyrin repeat
PROSITE profilePS5029713.76145146IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-1346148IPR020683Ankyrin repeat-containing domain
PfamPF136376.3E-54798No hitNo description
CDDcd002041.40E-1347143No hitNo description
SMARTSM00248680112IPR002110Ankyrin repeat
PROSITE profilePS5010313.976226253IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5226252IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5231251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6231252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4258290IPR000571Zinc finger, CCCH-type
SMARTSM0035627261284IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MGLLEYAACD DLPSFQREIE EKGLDLDEPG LWYCKKLGSN KMGLEQRTPL MVAAMYGSKK  60
VLTFIVSTGK SDVNRACGEE RVTALHCAVA GCSTNMVEVI NALLDAFALA NAVDANGNSP  120
LDLFVRVSRF VASPRRKAVE LLLRGGGSEG MMINEAVEEE EVKIVSKYPA DASLPDINEG  180
VYGSDEFRMY SFKVKPCSRA YSHDWTECAF VHPGENARRR DPRKYPYTCV PCPEFRKGSC  240
PKGDSCEYAH GVFESWLHPA QYKTRLCKDE TGCARKVCFF AHRREEMRPV NASTGSAVSQ  300
SPLEMMSGLS PLAYSSGVST RPVSPMGNNS VASSPRNGSW QNRVNSLSPP TLQLNGGSRL  360
KSTLSARDLD IDMEMELRLR GFNNVEESFG SYVSSPSRNS QMGQNMNQHY PSSPVRQQPP  420
PHHFDSSAAV AAAVMNARSS AFAKRSLSFK PQVASSPSNL SDWGSPSGKL DWGVQGDELS  480
KMRRSVSFGI RGDNGGNNAG RDYRNEPDVS WVNSLVKDSV VSERGFGMNE RVRIMSWAEQ  540
MYREKEQTVV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492191.10.0PREDICTED: zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLM4CSL30.0M4CSL3_BRARP; Uncharacterized protein
STRINGBra007205.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]