PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9075_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 150aa    MW: 17318.7 Da    PI: 8.6233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9075_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-0898117626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f+  G C++Gd+C FaHg
  RrC9075_p4  98 CPAFRN-GACHRGDTCEFAHG 117
                 666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.26792119IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-492118IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-697117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-598120IPR000571Zinc finger, CCCH-type
SMARTSM0035619127150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MLKSVNPMTF YDIGEQQFPT LGYIVSKPGN AGAYEIDPPL PTVDDVIYSS DEFRMYAYKI  60
KRCPRTRSHD WTECPYAHRG EKATRRDPRR YSYCAVACPA FRNGACHRGD TCEFAHGVFE  120
YWLHPARYRT RACNAGNMCQ RKVCFFAHAP
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507100.0AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444955.11e-111PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650361e-102C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A397XNC41e-108A0A397XNC4_BRACM; Uncharacterized protein
STRINGBra009257.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-105C3H family protein