PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9100_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 489aa    MW: 54065.3 Da    PI: 5.6513
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9100_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.95.7e-951244882374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 +e L++++++v+s++l+ a+ +L+rl+++ +sp+g+p+ R+a+yf+eAL + +++      +  + + ts+++ +e++ a k fs +sPi+ fsh+taN
  RrC9100_p1 124 IEDLIRVVDCVDSDELQHAHVILSRLNQRlRSPTGRPLLRAAFYFKEALGSLISG-----TNRNQNRLTSWTEIVERIRAIKEFSAISPIPLFSHFTAN 217
                 689*************************99*************************.....6777888888999************************** PP

        GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 qaIl++++++     Hi+Df+i+ G+Q+++L++++a+++      lR+T+v+++e   + e++ ++e+La+fA+ l+++f++++++++++e+l++++ r
  RrC9100_p1 218 QAILDSLHQSssPFAHIVDFEIGFGGQYASLMREIAEKSsVTGGFLRVTAVVPEE--FAVETRLVKENLAQFAADLKIRFQIDFVLMRTFEMLSFKAVR 314
                 *********966678***********************944456*********66..889999************************************ PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 + +gE ++V ++  +++ l       +  +++++ ++++sP+vvv+v++e      +++sF ++f++ le+y+++++sl+a +p+ +  ++ +E+++l+
  RrC9100_p1 315 FVEGERTVVLVSPVIFHRL-------NGVSSFVNDLRRVSPNVVVLVDSEgwNGIsGAGSFQREFVSGLEFYTVVLESLDAAAPTGDLGKKIIEAFVLR 406
                 ************9999998.......33457*******************642235889**************************************** PP

        GRAS 292 reivnvvacegaerrerh.etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++i  +v ++  +  +rh    ++Wre++++aG++ vpls+++  qa++l++k +++g++v +++g+lvl+W++rpLv++SaWr
  RrC9100_p1 407 PKIAAAVEAAAVS--KRHgGGEMTWREAFSAAGMRMVPLSQFVDFQAQCLVEKAQVRGFHVAKRQGELVLCWHGRPLVATSAWR 488
                 *******999998..555156789***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.19897468IPR005202Transcription factor GRAS
PfamPF035142.0E-92124488IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MRVPASSDSN SGGKNLVAYD EPTSVLGLRR SPSPTAVEEK PLVSAASGVD NQFPSDDHAM  60
RSMDWDSIMR ELELDDDSTP NLKPNFPHFA VVDPPLPGFP DQLNPADYGN DNNNNNNNEG  120
FDIIEDLIRV VDCVDSDELQ HAHVILSRLN QRLRSPTGRP LLRAAFYFKE ALGSLISGTN  180
RNQNRLTSWT EIVERIRAIK EFSAISPIPL FSHFTANQAI LDSLHQSSSP FAHIVDFEIG  240
FGGQYASLMR EIAEKSSVTG GFLRVTAVVP EEFAVETRLV KENLAQFAAD LKIRFQIDFV  300
LMRTFEMLSF KAVRFVEGER TVVLVSPVIF HRLNGVSSFV NDLRRVSPNV VVLVDSEGWN  360
GISGAGSFQR EFVSGLEFYT VVLESLDAAA PTGDLGKKII EAFVLRPKIA AAVEAAAVSK  420
RHGGGEMTWR EAFSAAGMRM VPLSQFVDFQ AQCLVEKAQV RGFHVAKRQG ELVLCWHGRP  480
LVATSAWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-221124878378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435220.10.0PREDICTED: scarecrow-like protein 15
RefseqXP_018435232.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLM4EH350.0M4EH35_BRARP; Uncharacterized protein
STRINGBra028100.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]