PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9115_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 221aa MW: 25337.4 Da PI: 5.2088

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9115_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.2	1.2e-30	45	171	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGf F+Ptde+ + +yLk kv +++++ ++i+++diyk++PwdL ++ ++++ewyfF++ +++y++g r++r t +g+W+ ++ke ++ ++ RrC9115_p1 45 LPPGFLFRPTDEQTLFYYLKGKVLSEEVT--DAIADLDIYKHDPWDLAgHSKLKSTEEWYFFTNLQSRYKSGPRTKRDTPHGRWRRGSRKKEFKDPNSD 141 79*********************9954..58**********8433334567************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l+g+k f+ ++ k e ++W m+e++l RrC9115_p1 142 LKGTKMPYSFFLKNGTKEEPSEWRMEEFKL 171 *******99999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-33	40	184	IPR003441	NAC domain
PROSITE profile	PS51005	34.054	45	219	IPR003441	NAC domain
Pfam	PF02365	4.7E-15	46	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEPEYEANPV SLPPMDVADP VSTQPPPPPV NISSAEETFQ LTVSLPPGFL FRPTDEQTLF 60 YYLKGKVLSE EVTDAIADLD IYKHDPWDLA GHSKLKSTEE WYFFTNLQSR YKSGPRTKRD 120 TPHGRWRRGS RKKEFKDPNS DLKGTKMPYS FFLKNGTKEE PSEWRMEEFK LENHSGMCVS 180 KVFRNKKEMV EQTTTPQGEI PSSSSDDEDA TSLLRIPQAQ L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-16	36	171	6	140	Stress-induced transcription factor NAC1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445665.1	4e-54	PREDICTED: NAC domain-containing protein 86-like
STRING	XP_010445665.1	1e-53	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	8e-29	NAC domain containing protein 52