PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC917_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 688aa    MW: 77430.4 Da    PI: 4.9429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC917_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06326226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k+ lC+ffa  G C  Gd+C F+H+
  RrC917_p6  3 KRILCKFFAH-GACLKGDNCEFSHD 26
               889***6666.*************5 PP
2zf-CCCH24.16.4e-083454526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               +C f++r G C+yG+rC++ H+
  RrC917_p6 34 ICTFYQR-GNCSYGSRCRYEHV 54
               7**9999.***********997 PP
3zf-CCCH20.96.3e-07120142326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++C+ +a+ G C++Gd+C+ +Hg
  RrC917_p6 120 KPICS-YAAAGDCPRGDQCPHIHG 142
                68899.**************9998 PP
4SRF-TF45.41.1e-144054381750
                HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  17 rngilKKAeELSvLCdaevaviifsstgklyeys 50 
                rng++KKA+ELS+LCd+++a+i+fs++++l  +s
  RrC917_p6 405 RNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 438
                89**************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.187128IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0512956IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-53155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-43453IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469117144IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-4118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.3E-9169287IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.32E-13176250No hitNo description
CDDcd001626.78E-6185245No hitNo description
PfamPF000971.8E-6186243IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238186244IPR001841Zinc finger, RING-type
SMARTSM001845.3E-7186243IPR001841Zinc finger, RING-type
PROSITE patternPS005180210219IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.16273301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197273302IPR000571Zinc finger, CCCH-type
SMARTSM004322.1E-5381440IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.348385441IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-15396461IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-9403418IPR002100Transcription factor, MADS-box
PfamPF003196.0E-13404435IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-9418439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGDN CEFSHDWKDP SNNICTFYQR GNCSYGSRCR YEHVKPSRPP  60
PASSSSSALL PPGTYLSSQR DLTSAPSASS PPPPQAWTLD SLDDQANNNN NTGPTNPEDK  120
PICSYAAAGD CPRGDQCPHI HGDLCSTCGK RCLHPFRPEE REEHKKACEK KHKQLEALKL  180
SQDVECCVCL ERVLSKPTPA ERKFGLLTEC DHAFCIGCIR NWRSSSPSTG MDVNSTLRAC  240
PICRKLSYFV VPSVIWFSDP EEKKEIMDNY RDKLRSIDCK HFNFGDGNCP FGTSCFYKHT  300
VKPGSYAWKY HRPPPRRPSP SSSGSNYSDI STFFSMMENI MSEGEYGPFG FEDSDDDDDD  360
EMTSTDMMML LMNLDHAFHD GRLEEVVLRH LDAEDGQTVI AKEIRNGLIK KAYELSILCD  420
IDIALIMFSP SDRLSLFSGK TRIEDVFTRF INLSNQEREN ALVFPDQDRR PDIQSKEELE  480
QEVCRLQQQL HMAEEELRRY EPDPVRFTSM EDYEVCEKQL LDTLTHVVQR RENLLSSHLS  540
SYEASTMQQG IAGPFVNGVV EGWLPENGHN QSHLFDASAH SNQLRELSSA MYDPLLQGSS  600
SSSNQNNMSE CQVTNHNGDM FSEWAQAYSS SALFPSMNQL GGVGPSLEEM MPGQQSEIPA  660
VTTTEAPQQA KLEVVDDYET KVPQLSSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892710.0AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110145.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1
TrEMBLA0A3N6TG560.0A0A3N6TG56_BRACR; Uncharacterized protein
STRINGBo8g071350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-152AGAMOUS-like 104