PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9237_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 248aa MW: 28297.3 Da PI: 7.0873

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9237_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44	4.1e-14	22	92	17	94
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +p f+ +h k++++kt +l++ s +W+vkl ++++ +++GW+ F+ a++L++gD+vvF+++g f +v RrC9237_p3 22 DIPLAFFLKHLDKSNKGKTAKLRSdASETTWNVKL--DGRR----FSDGWEYFAVAHDLRVGDIVVFRHEGGLVF--HV 92 5999999667778999999997888****..9998....9********************7664333..54 PP
2	B3	61.7	1.2e-19	146	235	4	96
E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +++++l+++ ++lpk fa + + + + +++l++e+ +sW+++l+ + +sgr++++ GW++F+ ang k+gD+++Fkl++ +e+++v+++ RrC9237_p3 146 IAVTASNLRRDVVYLPKAFAVVNclM-N---KLEIVLMNEERESWNLYLTQESYSGRFYMSHGWRSFCVANGKKTGDMFTFKLVQ-NEATPVLRL 235 5678999***********999643.3...347***********************************************99.566677665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	1.4E-14	12	98	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.81E-16	22	104	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-18	23	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.32E-14	23	93	No hit	No description
PROSITE profile	PS50863	10.32	23	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-9	23	90	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.6E-19	137	234	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-20	139	237	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.142	143	239	IPR003340	B3 DNA binding domain
CDD	cd10017	5.84E-17	143	237	No hit	No description
SMART	SM01019	6.7E-25	144	239	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-18	144	235	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MNTPRDILLG IFDGISSSPI KDIPLAFFLK HLDKSNKGKT AKLRSDASET TWNVKLDGRR 60 FSDGWEYFAV AHDLRVGDIV VFRHEGGLVF HVTALGPSCC EIQYGEDSQE EDKTEEPCDT 120 VEKISRKRKR PKTEIDFSTD QSCFVIAVTA SNLRRDVVYL PKAFAVVNCL MNKLEIVLMN 180 EERESWNLYL TQESYSGRFY MSHGWRSFCV ANGKKTGDMF TFKLVQNEAT PVLRLLPMNN 240 EDLHKLGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437986.1	1e-162	PREDICTED: B3 domain-containing protein REM10-like
Swissprot	P0DH85	1e-102	REM10_ARATH; B3 domain-containing protein REM10
TrEMBL	A0A3N6QND0	1e-147	A0A3N6QND0_BRACR; Uncharacterized protein
STRING	Bo8g099610.1	1e-144	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14490	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	1e-104	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]